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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BRCA rs56963764 chr18:44685377 TA/T 5.05E-6 1027 21.7 21.67 18.23 KM Plot
BRCA rs57137376 chr2:86500483 C/A 2.61E-6 1025 21.97 19.47 12.17 KM Plot
BRCA rs57279476 chr2:86493659 G/A 2.86E-6 1024 21.88 19.47 12.17 KM Plot
BRCA rs57412282 chr2:86507205 C/T 8.09E-7 1023 21.97 19.47 11.88 KM Plot
BRCA rs574984 chr10:80522530 A/C 2.64E-5 1028 21.68 21.33 19.23 KM Plot
BRCA rs57743711 chr2:86504165 A/G 2.62E-6 1024 21.97 19.47 12.17 KM Plot
BRCA rs57744138 chr18:44700482 A/C 3.87E-6 1026 21.7 21.58 18.23 KM Plot
BRCA rs57928699 chr18:44645593 T/A 2.12E-5 1022 21.57 22.2 18.13 KM Plot
BRCA rs58029983 chr2:86507135 A/G 2.62E-6 1024 21.97 19.47 12.17 KM Plot
BRCA rs58061761 chr18:44686165 T/C 5.06E-6 1026 21.73 21.67 18.23 KM Plot
BRCA rs58996019 chr2:86493897 G/C 2.86E-6 1024 21.88 19.47 12.17 KM Plot
BRCA rs59217333 chr18:44694844 A/C 5.05E-6 1027 21.7 21.67 18.23 KM Plot
BRCA rs59300790 chr2:86503877 T/C 2.62E-6 1024 21.97 19.47 12.17 KM Plot
BRCA rs59567456 chr2:86499387 G/A 2.61E-6 1025 21.97 19.47 12.17 KM Plot
BRCA rs59701454 chr20:30480783 T/A 1.03E-8 1004 21.17 23.37 10.03 KM Plot